Plant Breeding

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Participatory-based development of early bulking cassava varieties for the semi-arid areas of Eastern Kenya.
(2006) Kamau, Joseph Wainaina.; Melis, Robertus Johannes Maria.; Laing, Mark Delmege.; Shanahan, Paul Edward.
Cassava (Manihot esculenta Crantz) is an important food security crop in the semi-arid areas of Eastern Kenya. It provides food for more days in a calendar year than any other crop grown. Kenya has relied on varieties bred in other countries and because of this, local breeding methodologies and expertise are lacking. Access to appropriate varieties and adequate planting materials are major limiting factors to cassava production. Farmers grow late bulking landraces that take up to 18 mo to harvest. Efforts to introduce early bulking genotypes from IITA failed because of poor end-use quality. Local cassava breeding is necessary to alleviate the production constraints. Before a local breeding program can be established, farmers' preferences and production constraints must be identified and methodology appropriate to the Kenyan environment must be developed. The aims of this study were to identify farmer production constraints and preferences, to develop methods appropriate for cassava breeding in the semi-arid areas of Kenya, develop a population segregating for bulking period to estimate genetic variances that would explain the gene effects controlling yield components, and through participatory selection identify varieties that combine early bulking and preferred end-user traits. PRA tools, focus groups and individual interviews were used to identify production constraints and farmer preferences for cassava varieties. The PRA found that farmers grow 13 landraces in the area and 11 production constraints were identified and prioritised. The four most limiting in the order of importance were drought, lack of planting material, pests and diseases. Crosses between cassava varieties often do not produce much seed and the seed produced does not germinate well. Germination studies were done with open pollinated seeds to identify conditions favourable for seed germination in Kenya. The highest germination of the seeds was at 36°C. The control seeds had a higher germination percent (77%) compared to the seeds which were pre-heated at 36°C (57%). Crosses were made between selected IITA and local Kenyan genotypes following the NC 11 mating design to develop new genotypes which combine early bulking along with other farmer/end-user preferred characteristics. The hybrid progenies were evaluated in a seedling trial and clone genotypes advanced to a clonal trial and performance trial. The clonal trial was destroyed by red spider mites and cassava green mites, and only the tolerant 225 genotypes were planted in a performance trial that was harvested at 6, 7 and 8 mo after planting. The SCA effects were estimated to be 57% to 75% for most of the traits, except root number, which was mainly controlled by GCA effects (55%). Participatory selection of genotypes that combined early bulking and end-user qualities at the 7 and 8 mo after planting was done by farmers. Thirty genotypes that combined early bulking and end-user qualities were identified and ranked according to their performance in both agronomic and end-use traits using a selection index. A number of selected genotypes yielded more than three times the yield of the best parents, showing strong progress in breeding. Combining the farmers' preference aggregate score and the selection index based on the agronomic data, assisted in the final identification of the best genotypes developed in the breeding process. These results clearly demonstrated that it is possible to breed early bulking varieties with good end-use quality in the semiarid areas.
Characterization of sorghum [Sorghum bicolor (l.) Moench] parental lines and prediction of their hybrid performance under simulated water and population density stress.
(2006) Karari, Clement Kamau.; Tongoona, Pangirayi.; Derera, John.; Laing, Mark Delmege.
Sorghum breeders have not made much yield improvement in new sorghum varieties in Kenya since Serena in was released in the late 1960s. KARI Mtama-1 which was released in 1993 has no yield advantage over Serena. A yield plateau for sorghum in Kenya is apparent. A new breeding approach was adopted to break that yield barrier. Development of hybrid sorghum was proposed and is expected to break the yield barrier and also deliver cultivars that meet farmers' main requirements. The objectives of the study were to (1) identify farmers' requirements in sorghum cultivars, constraints to sorghum production and why improved cultivars from research are not being adopted, (2) characterize male and female parents and establish if genetic distance could identify superior parent populations for hybrid production (3) estimate genetic variance components and determine the possibility of using GCA and SCA estimates in choosing parents for use in hybrid production, (4) test hybrids and open pollinated variety (OPV) parental lines for stress tolerance and identify tolerant hybrids for further testing and, (5) compare single cross hybrids and OPV varieties in yield performance. Participatory rural appraisal in Kitengei and Nzambani areas of Kambu showed that sorghum was especially important in semi-arid parts of Kenya. Food, trade, feed, nursing food and thatching were the most important uses of sorghum. High grain and stover yield, large grain size, early maturity, drought tolerance, pest and disease resistance, coloured grain and intermediate plant height were the major requirements of farmers. Fifty-three pollinators and forty-one male sterile parents were introduced from four sources and screened together with 27 pollen parents from Kenya. Parents and hybrids were tested in 4 environments: high and low plant density, in high and low moisture regimes laid out in a triple square lattice design in Kenya, with parents having two additional tests in South Africa. Males, females, sexes and parental sources differed significantly in head weight. There were sex x country and sex x environment interactions for head weight. Genetically distant parents' populations had higher chances of superior heterosis. Parents showed significant additive genetic variance in head weight. The regression of non-additive to additive genetic variance was roughly one and significant. Three female and five male parents were suitable for production of hybrids adapted to multiple environments. Hybrids and OPV lines significantly varied in head weight. Hybrids were superior to OPV lines in most agronomic traits. Economic superiority of the hybrids was sufficient to cover cost of hybrid production and distribution in Kenya. Hybrids and OPV lines varied significantly for plant density stress. Hybrids were less sensitive to stress and more productive than OPV lines under population density stress. KARI varieties were sensitive to plant density stress. In general low sensitivity to stress was beneficial and hybrids had superior yield to inbred varieties.
A comparative analysis of conventional and marker assisted selection methods in screening for resistance to maize (Zea mays L.) streak virus disease.
(2006) Abalo, Grace.; Tongoona, Pangirayi.; Derera, John.
Maize (Zea mays L.) streak virus disease (MSD) is the most important virus disease in Africa but farmers are unaware of its status. A project was initiated to assess the current status of MSD and to breed for its resistance. Four populations comprised of two BC1F1 and two F2 progenies developed by backcrossing and selfing the F1 progenies of two crosses between a donor line (CMl 202) and two susceptible lines (CMl 321 and CMl 384) were developed. Conventional and molecular marker assisted selection (MAS) methods were used to screen for resistance to MSD in each of the four populations. To facilitate unbiased comparison, separate screening nurseries were established for MAS and conventional screening. The objectives of the study were five-fold; 1) to assess the status of MSD in Uganda and understand farmers' preferences and varietal selection criteria for maize using a participatory rural appraisal (PRA), 2) to screen for MSD resistance in early generations of segregating maize populations using conventional method, 3) to screen for resistance to MSD using SSR marker assisted selection , 4) to compare the effectiveness of marker assisted selection and conventional methods for selection for resistance to MSD, and 5) to compare costs associated with MAS and conventional selection methods. Results of PRA showed that unreliable rainfall and insect pests were the dominant constraints to maize productivity in Uganda. Diseases were ranked fifth among the production constraints . Maize streak virus disease was considered the most important disease constraint. Farmers showed common preference for high yielding and early maturing cultivars. However, farmers had other special preferences which were diverse and included large, white and high test density kernels for marketing, and sweet taste, particularly for home consumption. Farmers' research priorities included tolerance to drought, resistance to insect pests and diseases, sweetness, prolificacy, resistance to lodging, and drooping leaves because theyt cover the soil fast and prevent weed growth. Conventional screening for resistance to MSD showed that backcross and selfing populations segregated in 1:1 and 3:1 Mendelian ratios confirming the presence of one major gene with simple inheritance . Severity and incidence of disease were positively correlated suggesting a non-reference by the insects. In the selfing populations, the presence of complete esistance against MSD was suggested because frequency distribution patterns were highly skewed in favour of resistance. There was a decrease in disease severities with selection from BC1F1 to BC2F1 and from F2 to F3 generations indicating that high response to selection was achieved. On the other hand, one marker, umc1917, consistently polymorphic and eo-dominant was selected and used in MAS protocol. Results showed that the observed outcomes fitted the expected ratio of 1:2:1 for a F2 population and 1:1 for a BC1F1 population (X2 not significant). Evaluation of F3 and BC2F1 progeny selected using markers showed low disease severity suggesting that marker assisted selection was effective. However, the study showed that the presence of the O'Tl, was not consistent with symptom expression in the field. Evaluation of lines in three-way crosses identified ten potential lines that were high yielding, highly resistant to MSD and stable across three locations. Both MAS and conventional selection were equally effective in identifying high yielding lines although resistance was higher under MAS. Costs of MAS and conventional method varied depending on the units for comparison. The total costs of conventional method were higher than that of MAS in both first and second selection cycles. Comparing costs per row for conventional and costs per plant or data point for MAS showed that conventional selection was 2.4 times more expensive than costs per sample for MAS. However, costs per plant for MAS were 6.6 times higher than for conventional selection.
Study of anthracnose (Colletotrichum lindemuthianum) resistance and its inheritance in Ugandan dry bean germplasm.
(2006) Nkalubo, Stanley.; Melis, Robertus Johannes Maria.; Laing, Mark Delmege.
The common bean (Phaseolus vulgaris L.) is an important crop grown widely in Uganda. It is also an important source of income for smallholder farmers particularly women. Despite its importance, production in the cool highland regions is constrained by anthracnose disease which causes losses in both the quantity and the quality of beans produced. The principal aim of this research was to elucidate on the status of dry bean anthracnose and the genetics governing its resistance. A participatory rural appraisal study was conducted to explore farmers' knowledge, experience, problems and cultivar preferences in association with managing dry bean anthracnose disease. This study revealed that anthracnose is an important constraint to production which is not controlled in any way. Although farmers have varying cultivar preferences, they use mostly home saved seed and only 1% could access improved seed. The study suggested the need for practical approaches in the provision of quality anthracnose resistant seed in consideration of farmers' preferences and the dynamics of their rural livelihoods. A study was conducted to determine the variability of the anthracnose (Colletotrichum lindemuthianum) pathogen in some of the major bean growing regions of Uganda. Use was made of a set of 12 internationally accepted anthracnose differential cultivars to identify the physiological races present. The results obtained indicated the presence of eight races with one race (767) being dominant and most aggressive. Differential cultivars AB 136 and G2333 were resistant to all the eight races, and can be utilised as potential sources of resistant genes. A germplasm collection of mostly Ugandan accessions was screened for anthracnose resistance. Using the area under disease progression curve as the tool for assessing disease severity, eleven accessions were identified that posses good levels of anthracnose resistance. The yield loss attributed to the anthracnose disease was determined on three susceptible Ugandan market-class dry bean cultivars and two resistant cultivars. The results showed that the yield of susceptible cultivars was reduced by about 40% and an almost equivalent yield was lost due to poor quality seed. In comparison, the yield lost by the resistant cultivars was not significant. The study suggested the use of resistant cultivars as the best solution in combating anthracnose resistance. Three susceptible Ugandan market class dry bean cultivars and six resistant cultivars were used for the study of the inheritance of resistance to the anthracnose pathotype 767 in a complete 9x9 diallel design. The results clearly indicated that the resistance was predominately conditioned by additive gene action. It was also established that epistatic gene action was important. More than one pair of genes displaying partial dominance were responsible for determining resistance and the maternal effect did not have an influence on resistance. Additionally, the result showed that some of susceptible cultivars combined very well with the resistant cultivars and that anthracnose resistance heritability estimates in both the narrow and broad sense were high. These results suggested that the use of simple pedigree breeding procedures such as backcross selection could be useful in improving anthracnose resistance levels in the Ugandan market class varieties.
Studies of drought tolerance in interspecific progenies of Oryza glaberrima (Steud) and O. Sativa (L) and an appraisal of the use of male gametocides in rice hybridisation.
(2006) Efisue, Andrew A.; Tongoona, Pangirayi.; Derera, John.
Rice production in Sub-Sahara Africa is hampered by drought stress, low farmer adoption of improved varieties, un-adapted germplasm, problems of crossability between species and problems of efficient emasculation. This study was initiated to: (1) determine farmer preferences for rice varieties and production practices, (2) identify drought tolerant parental lines for use in interspecific crosses, (3) determine crossability between different rice species, (4) identify drought tolerant interspecific segregants from crosses, and (5) study the efficacy of ethrel and gibberrilic acid (GA3) as chemical hybridising agents. Participatory rural appraisal (PRA) was conducted in Sikasso region in the month of September 2005 to determine farmer preferences for varieties and production constraints. A total of 125 rice farmers from 10 villages participated. This study found that farmer preferences for rice traits did not coincide with the breeders' objectives and trait preferences varied across ecologies. In upland and lowland rice ecologies, the most preferred characteristic was short duration. In the lowland tall plants was most preferred and short duration trait ranked second. Long duration ranked as the second most preferred trait after yield in the irrigated rice ecology. The estimated grain yield reduction was 60% due to drought stress from all ecologies. Sixteen genotypes including seven Oryza glaberrima Steud, six interspecific (0. saliva x 0. glaberrima) inbred genotypes and two improved 0. saliva L. subsp Gaponica) genotypes, with OS 6, as drought tolerant check were screened for drought tolerance at the vegetative stage during the dry seasons of 2004 and 2005 at Samanko research station, in Mali. Most of the genotypes could be regarded as exhibiting drought tolerance and avoidance mechanisms for most of the morpho-physiological characters under study. High selection index was observed for WAB 450-I-B-P-103-HB in the two season experiments. Drought stress tolerance (little leaf drying) was significantly correlated with leaf rolling, leaf area index, and plant height. Fast drought recovery was significantly correlated with drought tolerance, tiller number and leaf area index. Effects of genotypes, environment and their interactions were significant for tiller number, root dry weight and relative leaf water content. The most stable genotype was RAM 3 for tiller number and relative leaf water content. Thirteen genotypes were selected on the basis of these traits for rice hybridisation. A factorial arrangement involving three levels of gametocide concentrations and five application stages of the female rice parent was undertaken for each gametocide ethrel and GA3 for two seasons. Per cent empty spikelets and male sterility increased with concentration of ethrel. Male sterility induction of 41.5% and 42.8% at 2000 ppm was achieved in 2004 and 2005, respectively, while at 4000 ppm male sterility induction was 40.5 % and 46.1% in 2004 and 2005, respectively. The best application stage of ethrel that induced highest male sterility was at P4 (panicle primordium differentiation + spikelet primordium differentiation) of 46.6% in 2004 and 49.2% at PI (panicle primordium differentiation) in 2005. There was no measurement on GA3 for sterility due to lodging. Total male sterility was not achieved therefore, these gametocides could not be recommended for use as hybridising agents. Crossability was studied in four groups: group A (0. glaberrima x 0. saliva), group B (0. glaberrima x Interspecific), group C (Interspecific x 0. saliva) and group D (Interspecifics x Interspecific). High percent seed set was obtained in group D of 19.08% and group A had 9.29%, in group B the seed set was 11.26% and group Chad 6.62 %. The three best combiners as female parents based on percentage seed set were CG 14 (0.glaberrima), WAB 450-IBP-I05-HB and WAB450-I-B-P-I03-HB (interspecifics), and for male parents were NERICA 3, NERICA 2 (interspecifics) and WAB 375-B-9-H3-2 (0. sativa). Genetic components of variance and heritability estimates were studied in F3 and F4 generation progenies from North Carolina II design mating scheme. General combining ability (GCA), manly due to female and specific combining ability (SCA) were significant for tiller number, plant height and specific leaf dry weight indicating that additive and non-additive genetic effects controlled these traits. Heritability estimates for drought tolerance and leaf rolling were highly significant for all the populations examined, ranging from 0.32 to 0.72 and 0.22 to 0.56, respectively. Drought tolerance expressed as little leaf drying was significantly associated with less leaf rolling, larger leaf area index, and taller plants. Some genotypes and progenies such as WBK 39-B-B-B, WBK 30-B-B and WAB 450-I-B-P-I03-HB were identified as being drought tolerant with the ability to recover quickly from drought stress. There was a strong desire for tall plants and short duration rice in upland and lowland ecologies, while high yield was preferred in irrigated ecology. Therefore, the best breeding strategy would be ecosystem breeding targeting each of the ecologies. Screening for secondary traits that have been identified to be significantly associated with rice grain yield could be used for direct selection for grain yield under drought stressed conditions. Progenies identified, as drought tolerant would be considered for use as source germplasm in breeding that target Sikasso region and any other similar ecologies. This study therefore suggested that participatory research approaches that involve all stakeholders in rice production would be valuable in identifying and generating drought tolerant and adoptable rice cultivars in the tropics of Africa with considerable impact on food security.
Breeding investigations of maize (Zea mays L.) genotypes for tolerance to low nitrogen and drought in Zambia.
(2007) Miti, Francisco.
Low soil nitrogen (N) and drought impede maize production in the small-scale farming sector in Zambia; and adoption of new cultivars with improved tolerance might enhance production. This study: a) assessed farmer preferences for maize cultivars; b) determined genotype x environment interaction effects among popular maize cultivars under contrasting soil fertility levels and; c) investigated landraces for tolerance to low N and drought using S1 selection. The study was carried out in Zambia from 2004-07. Farmer preference influencing the adoption of maize cultivars was investigated using both formal and informal surveys in Luangwa, Chibombo and Lufwanyama rural districts representing the three agro-ecological regions of Zambia. Focus group discussions and personal interviews were used to collect data on issues that affected maize production in these areas. It has been found that although farmers perceived landraces to be low yielding, they believed that they were superior to improved cultivars for: tolerance to drought; tolerance to low soil fertility; grain palatability; grain storability; and poundability. The need for food security, their inability to apply fertiliser, and their need for drought tolerant cultivars significantly (p ≤ 0.05) influenced farmers in adopting cultivars. The farmers would readily adopt cultivars that address these concerns. The predominant use of certain landraces (76%) reflected their superiority in meeting some of these needs. The performance of nine popular cultivars (three for each of hybrids, OPVs and landraces) under contrasting levels of soil fertility, across six environments (ENVs) in the three agro-eological regions, was evaluated. An ENV was defined as season x location combination. The fertilizer treatments were full fertilization, basal dressing, top dressing and nil fertilization. The cultivars exhibited significant non-crossover type of genotype x fertilisation interaction effects at three ENVs, while the genotype x fertilisation interaction effects, were non-significant at the other three ENVs. The cultivars exhibited dynamic stability by increasing grain yield (GY) when fertilization was increased. Landraces yielded higher than all open pollinated varieties and were generally higher yielding than two hybrids. Based on average rank for GY, the five highest yielding cultivars were MRI724, Gankata, MM603, Kazungula and Pandawe. Superiority of landraces revealed their genetic potential for GY under low soil fertility and they should be used as germplasm in developing cultivars targeting such environments. Ninety-six local landraces were selfed to generate S1 lines (2004/05 season) which were crossed to a tester (2005/06 season). Testcrosses were evaluated under optimal, low N, and drought conditions (2006/07 season). Data on GY, anthesis-silking interval, number of ears per plant, leaf senescence, leaf rolling, tassel size and grain texture were recorded in all the trials during the study period. Testcrosses, their S1 parents and landraces that were superior under low N, drought, optimal conditions and across environments were identified; these should be used to develop varieties targeted to a particular environment. Selection for tolerance to drought also selected for tolerance to low N. Selection for low N tolerance also selected for GY under drought and optimal conditions. Therefore, in selecting for tolerance to abiotic stresses, use of optimal and managed stress environments was effective. The following landraces were superior at 10% selection intensity: LR38, LR84 and LR86 (optimal, low N and drought conditions); LR11, LR35 and LR76 (low N and drought conditions); LR12 (optimal and drought conditions); LR40 and LR93 (low N conditions only); LR79 (drought conditions only) and; LR74 and LR85 (optimal conditions only). These landraces should be used as source germplasm targeting respective environments. Significant (p ≤ 0.05) positive general combining ability effects for GY under both low N and drought conditions were found implying that additive gene action conditioned GY under the abiotic stresses. The heritability for GY under low N (0.38), and drought (0.17) conditions, was low suggesting that selection based on GY alone was not effective. The genetic correlation for GY between optimal, and either low N (rG=0.458), or drought (rG = 0.03) environments, was low (rG < 0.5) suggesting that indirect selection would not be effective either. Therefore, use of secondary traits for selection is discussed. The study established that most farmers depended on local landraces for seed and would adopt low input improved varieties that yield higher than the landraces. Some landraces were found superior to some improved cultivars under contrasting fertilisation regimes. The study also found that landraces had genetic variation for tolerance to low N and drought. Landraces, S1 lines and testcrosses superior under low N, drought, optimal conditions and across environments were selected and they should be used to develop cultivars targeting respective environments. Policy implications of these results are discussed.
Recurrent selection for drought tolerance in Maize (Zea mays L. and study of heterotic patterns of maize populations from Eastern Kenya.
(2007) Leley, Philip Kipkoech.; Tongoona, Pangirayi.; Derera, John.; Ininda, Jane.
There are few maize varieties that are drought tolerant in semi-arid eastern Kenya and farmer perceptions of drought tolerant maize cultivars have not been studied in this region. Farmers in this region use maize landraces that have not been studied for their potential future hybridization. The main objectives of this study were therefore to: (i) study farmer perceptions of drought and preference for maize varieties, (ii) improve drought tolerance in maize populations in the semi-arid eastern Kenya using S1 family recurrent selection, and (iii) classify maize landraces according to their heterotic patterns. A participatory rural appraisal (PRA) was conducted in Machakos and Makueni districts in semi-arid eastern Kenya. A total of 175 farmers were involved in focus group discussions. An open ended questionnaire and a checklist were used to guide the farmers during the discussion sessions. Scoring and ranking techniques were used to assess farmers’ preferences of maize varieties and constraints to maize production. The farmers grew maize as their major crop followed by beans. Nearly 60% of the farmers grew local maize landraces, whose seed they recycled from season to season; 40% grew improved varieties, but mainly composites rather than hybrids. The key farmers’ criteria for choosing a maize variety in order of importance were drought tolerance, early maturity, high yield, and disease resistance. The major constraints to maize production were drought, lack of technical know-how, pests, poor soils, and inadequate seed supply. Maize traits preferred by farmers in a drought tolerant variety included high yield, recovery after a dry spell and the stay green characteristic. Two maize landrace populations MKS and KTU from semi-arid eastern Kenya and three CIMMYT populations V032, ZM423, and ZM523 were subjected to two cycles of S1 progeny recurrent selection for drought tolerance in yield and traits indicative of drought tolerance were measured during flowering and grain filling from February 2005 to September 2007. Evaluation to determine selection gains was done in one trial replicated five times. It was laid out as a 4x4 lattice design and drought was imposed at reproductive stage by withholding irrigation one week before flowering and resumed during grain filling. The trial was repeated under well-watered conditions which served as a control experiment. After two cycles of selection under drought stress conditions, KTU population had a realized gain in yield of 0.2 t ha-1, MKS population 1.2 t ha-1 and ZM423 0.4 t ha-1, whereas in V032 and ZM523, grain yield reduced by 1.1 t ha-1 and 0.6 t ha-1, respectively. Under well watered conditions, the realized gains in grain yield were positive in all the populations except V032, where there was a reduction of 0.1 t ha-1. Selection increased the genetic variability and heritability estimates for yield in S1 lines of MKS and ZM423 populations, but decreased in KTU, V032 and ZM523 populations. The research to identify heterotic patterns was undertaken using ten maize landraces from the semi-arid eastern Kenya, six maize landraces from coastal Kenya, and three maize populations from CIMMYT. These populations were planted at Kiboko Research Farm during the short rains of October-December 2005 and crossed to two population testers, Embu 11 and Embu 12. The evaluation of the test crosses was done during the long rains of March-June 2006. Percentage heterosis for yield ranged from -17.7% to 397.4%, -79.4 to 22.2% for anthesis-silking interval, -23.9% to 29.2% for ear height, -0.1 to 1.1 for ear diameter, -7.1 to 21.2% for ear length and -5.9% to 30.3% for plant height. iii General combining ability (GCA) effects were significant (p=0.05) for all the traits, while specific combining ability (SCA) effects were not significant (p>0.05), implying that variation among these crosses was mainly due to additive rather than nonadditive gene effects. Since SCA was not significant (p>0.05) for yield, maize populations were classified based on percentage heterosis for yield alone. The maize populations therefore, were grouped into three different heterotic groups P, Q and R. Twelve landrace populations and two CIMMYT populations showed heterosis with Embu 11 and no heterosis with Embu 12 were put in one group P. Two landrace populations that showed no heterosis with either tester were put in group Q. Two landrace populations and one CIMMYT population showed heterosis with both testers were put in group R. None of the populations showed heterosis only with Embu 12 and no heterosis with Embu 11. The main constraint to maize production was drought and the farmers preferred their landraces whose seed they recycled season to season. After two cycles of recurrent selection, the landrace populations showed improved progress in yield. Thus, further selection will be beneficial in the populations where genetic variability increased. Therefore, these populations can further be improved per se and released as varieties and/or incorporated into the existing maize germplasm to broaden their genetic base, given that their heterotic patterns have been identified. Considering that farmers recycle seed, breeding should be towards the development of open-pollinated varieties which are drought tolerant.
Sub-imbibed storage of recalcitrant seeds of four species.
(2007) Eggers, Sharon Kim.; Berjak, Patricia.; Pammenter, Norman William.; Erdey, Deon Philip.
The seeds of Trichilia dregeana, Trichilia emetica, Podocarpus henkelii and Syzygium cuminii display the characteristics typical of recalcitrant seeds. It is the phenomena of ongoing metabolic activity and desiccation sensitivity that render them unsuitable for storage by the conventional methods used for orthodox seeds. Investigations on the storage responses of 'sub-imbibed' (partially dried) and fully hydrated seeds of all four species were carried out to study the effects of partial drying on viability and subsequent storage lifespan; i.e. to assess whether 'sub-imbibed' storage is feasible for these species. The outcome of this investigation was proposed to contribute to the resolution of the argument that storing recalcitrant seeds at lowered water contents might extend their longevity; i.e. storage at a relatively high water content but below the fully hydrated level, might prevent germination but would not be sufficient to be injurious to the seed. Seeds of T. dregeana, T. emetica, P. henkelii and S. cuminii were dried to various target moisture contents (which were determined for each species in the initial drying experiment) and then subjected to storage for 3-22 weeks at 6, 16 and 25°C (in sealed containers). In parallel, seeds of each species were stored at the shedding water content. The seeds were periodically removed for sampling, and assessed for water content, germination, respiration, electrolyte leakage and microscopical features. Storage temperature appeared to affect viability of seeds of T. emetica and T. dregeana which displayed characteristics of chilling sensitivity. Storage at 6°C was detrimental (when compared with seeds stored under the same conditions at 16 and 25°C), but regardless of whether the seeds were undried or partially dried prior to storage. The seeds of P. henkelii did not demonstrate chilling sensitivity, the viability not being compromised at 6°C compared with those seeds stored at 16 and 25°C. Syzygium cuminii seeds were not subject to storage at 6°C because previous work indicated that they would be chilling-sensitive. Storage of 'sub-imbibed' seeds of T. dregeana, T. emetica, P. henkelii and Syzygium cuminii does not to confer any benefit over seeds stored in the fully hydrated state; rather it appears to be deleterious to seed survival during storage. This was apparent from the assessment of viability, electrolyte leakage and respiration. Vigour and viability of the 'sub-imbibed' seeds of all species declined more rapidly than the fully hydrated seeds. The only exception was P. henkelii seeds stored at 25°C, the fully hydrated seeds showed no survival after 11 weeks in storage, while 88% of the 'sub-imbibed' seeds survived this period. These results were, however, attributed to the proliferation of fungi on the fully hydrated seeds at 25°C. Although ultrastructural observations were made only on the T. emetica seeds, it was apparent that the cells from the 'sub-imbibed' seeds (after storage at 16 and 25°C) showed extensive degradation, with the intra-cellular components being largely unrecognisable. The cells from the seeds stored in the fully hydrated condition at 16 and 25°C maintained integrity and appeared metabolically active. In keeping with the suggestion that T. emetica seeds are chilling sensitive, the ultrastructure of the cells from both the 'sub-imbibed' and fully hydrated seeds showed deteriorative changes. All the results of the present study indicated that storage in the 'sub-imbibed' state is deleterious to seed survival. It is apparent that the removal of water, however small a proportion, accelerates seed deterioration during storage. Thus 'sub-imbibed' storage has no practical application for the storage of recalcitrant seeds.
Development of high yielding pigeonpea (Cajanus cajan) germplasm with resistance to Fusarium wilt (Fusarium udum) in Malawi.
(2007) Changaya, Albert Gideon.
Pigeon pea [Cajanus cajan (L.) Millspaugh] is a very important grain legume crop for food, cash and firewood in Malawi. However, its production is affected by Fusarium wilt (Fusarium udum Butler), which causes up to 100% yield loss. The deployment of resistant varieties would be an economical way to manage the disease, and for this, more information is needed on farmers' preferences for local landraces, how farmers and consumers can be involved in developing new varieties resistant to wilt disease, and the genetics of inheritance of resistance. This information would be used to devise a breeding strategy. A participatory rural appraisal was used in the southern region of Malawi to identify pigeonpea production and marketing constraints. Results showed that Fusarium wilt was the most prevalent and destructive disease of pigeonpea in the area. Other constraints included pests, flower abortion, low yields, and low soil fertility. Local landraces accounted for 84% of the pigeonpea production in Malawi. Local landraces were preferred due to their fast cooking time, taste, and the high prices they earn the farmer. Participatory variety selection was used to identify landraces with desirable traits that could be used in the breeding programme. Farmers and buyers selected ten local landraces which were used in the genetic improvement programme. Pigeonpea local landraces and international Crops Research Institute for the Semi-Arid Tropics (ICRISAT) genotypes were evaluated for wilt resistance, yield, and secondary traits at three sites over three seasons. Most of the landraces were susceptible to wilt and late maturing. However, AP10, a local landrace, was high yielding and resistant to wilt and outperformed ICRISAT varieties. This local landrace showed promise for use as a source material for Fusarium wilt resistance in other locally adapted farmer-preferred varieties lacking resistance. The local landraces needed genetic improvement in wilt resistance, yield, early maturity, number of branches and seeds pod. Laboratory and screenhouse studies were performed to develop a new Fusarium wilt screening technique. Grains of finger millet, sorghum, and wheat were tested as media for multiplying F. udum isolates. Pathogenicity tests were done on Bunda College and Bvumbwe Research Station isolates. The Bunda isolate was then used in an infested-seed inoculation technique against eight differential cultivars. The results showed that finger millet, sorghum and wheat were equally effective for rapid multiplication of F. udum isolates. Wheat grain showed the best results for pathogen multiplication and inoculation, due to the large seed size for easy handling. The inoculation process involved placing infested wheat grain on bruised pigeonpea roots and transplanting into soil in pots. The infested seed inoculation technique, which is the first of its kind for pigeonpea, was effective in screening pigeonpea for wilt resistance. The selected landraces were crossed with wilt resistant testers in a 12 lines x 4 testers mating scheme, and 48 F1 crosses were generated. These F1 crosses were evaluated for wilt resistance, yield, and secondary traits. The variations among F1 crosses for wilt and secondary traits were due to additive gene action in both parents and the dominance effects arising from the interactions of parents. Parental lines, with good combining ability effects for wilt resistance (AP2, AP3, and AP4), days to 50% flowering, seed pod, plant height, stem diameter, and number of primary and secondary branches were identified, while ICEAP00554 (tester) was a good general combiner for wilt resistance and days to 50% flowering. These lines would be useful in breeding for Fusarium wilt resistance in farmer-preferred pigeonpea genotypes in Malawi or similar environments. Specific F1 crosses were identified with significant SCAs for wilt resistance, days to 50% flowering, and secondary branches. The significance of GCA and SCA effects, which indicated importance of both additive and non-additive gene effects, respectively, suggested that both selection and hybridisation would be useful to improve the resistance in farmer-preferred varieties. Segregation analyses were conducted on F2 populations to determine the resistance to susceptibility phenotypic ratios. The Chi-square analyses showed that resistance to wilt was dominant over susceptibility in most F2 populations. The segregation ratios of 3:1, 13:3, 15:1, and 9:7 (R:S) indicated that either one dominant gene, or two inhibitory genes, or two independent dominant genes, or two complementary genes, respectively, were conferring wilt resistance in these crosses. Involvement of only a few genes governing wilt resistance suggested few complications, if any, in breeding for this trait in these locally adapted pigeonpeas. The Pedigree breeding method would be recommended for incorporating these traits.
Response to selection for downy mildew (Peronosclerospora sorghi) and maize streak virus resistance in three quality protein maize populations in Mozambique.
(2007) Mariote, David.; Tongoona, Pangirayi.; Derera, John.
Quality protein maize (QPM) has high nutritional value, but production is threatened by downy mildew (DM) and maize streak virus disease (MSVD) among other constraints. There are few studies of DM and MSVD resistance in QPM cultivars. The objective of this study was to improve resistance to DM and MSVD in three QPM populations. This was realized through ascertaining farmers’ key production constraints and special preferences for cultivars; determining the utility of recurrent selection method for improvement of three QPM populations (SussumaS2, ZM521Q and Pop62SRQ); and determining grain yield potential. The study was conducted in Mozambique for DM and in Zimbabwe for MSV, during 2003 to 2006. Surveys were conducted in Manica and Angonia districts in Mozambique to ascertain farmers’ perceptions and preferences for maize varieties, especially QPM. Participatory rural appraisal tools that included semi-structured questionnaires and focus group discussions were used to collect data. Results showed that farmers predominantly grew open pollinated varieties and fewer normal maize hybrids (non-QPM), and grain yield was estimated to be very low (0.2 to 0.6 t ha-1). Results showed that drought and insect pests were the dominant constraints to maize productivity in Mozambique, while diseases were ranked third. Downy mildew disease and MSVD were considered to be the most important diseases reducing maize productivity. Farmers also showed high preference for high yielding and early maturity cultivars in all areas. Predominantly, farmers were still using their local landraces because of sweet taste, particularly for home consumption and flint grain for storage. Farmers’ access to improved cultivars was limited due to high seed prices on the local market. Research priorities as perceived by the farmers included breeding for resistance to drought, grain weevils and diseases and sweetness. Generally, farmers showed little knowledge of QPM varieties and the importance of this trait, but they observed that the few QPM varieties they knew had some weaknesses such as poor storability and susceptibility to DM and MSVD which required improvement. These results should be considered in breeding new cultivars, both normal and QPM. To improve DM and MSV disease resistance in QPM varieties, S1 recurrent selection was conducted in three QPM populations, Sussuma, ZM521Q and Pop62SRQ at Umbeluzi Research Station in Mozambique and at CIMMYT-Harare Research Quality protein maize (QPM) has high nutritional value, but production is threatened by downy mildew (DM) and maize streak virus disease (MSVD) among other constraints. There are few studies of DM and MSVD resistance in QPM cultivars. The objective of this study was to improve resistance to DM and MSVD in three QPM populations. This was realized through ascertaining farmers’ key production constraints and special preferences for cultivars; determining the utility of recurrent selection method for improvement of three QPM populations (SussumaS2, ZM521Q and Pop62SRQ); and determining grain yield potential. The study was conducted in Mozambique for DM and in Zimbabwe for MSV, during 2003 to 2006. Surveys were conducted in Manica and Angonia districts in Mozambique to ascertain farmers’ perceptions and preferences for maize varieties, especially QPM. Participatory rural appraisal tools that included semi-structured questionnaires and focus group discussions were used to collect data. Results showed that farmers predominantly grew open pollinated varieties and fewer normal maize hybrids (non-QPM), and grain yield was estimated to be very low (0.2 to 0.6 t ha-1). Results showed that drought and insect pests were the dominant constraints to maize productivity in Mozambique, while diseases were ranked third. Downy mildew disease and MSVD were considered to be the most important diseases reducing maize productivity. Farmers also showed high preference for high yielding and early maturity cultivars in all areas. Predominantly, farmers were still using their local landraces because of sweet taste, particularly for home consumption and flint grain for storage. Farmers’ access to improved cultivars was limited due to high seed prices on the local market. Research priorities as perceived by the farmers included breeding for resistance to drought, grain weevils and diseases and sweetness. Generally, farmers showed little knowledge of QPM varieties and the importance of this trait, but they observed that the few QPM varieties they knew had some weaknesses such as poor storability and susceptibility to DM and MSVD which required improvement. These results should be considered in breeding new cultivars, both normal and QPM. To improve DM and MSV disease resistance in QPM varieties, S1 recurrent selection was conducted in three QPM populations, Sussuma, ZM521Q and Pop62SRQ at Umbeluzi Research Station in Mozambique and at CIMMYT-Harare Research.
A study of bruchid resistance and its inheritance in Malawian dry bean germplasm.
(2007) Kananji, Geoffrey Acrey Duncan.; Melis, Robertus Johannes Maria.; Derera, John.; Laing, Mark Delmege.
Dry bean (Phaseolus vulgaris L.) is economically and nutritionally an important legume, not only in Malawi, but in many parts of Africa and Latin America. Unfortunately, two bruchid species (Acanthoscelides obtectus Say, and Zabrotes subfasciatus Boheman) are known to cause extensive damage in storage, reducing the economic importance, food value and planting value of the crop. The aim of this study was to: i) ascertain farmers’ perceptions of the importance of bruchids as storage pests, and to identify their preferred varietal traits in dry beans; ii) screen Malawian dry bean landraces for effective and adaptable sources of resistance to the two bruchid species; iii) determine the gene action and inheritance of bruchid resistance. Farmers’ perceptions on the importance of the two bruchid species to beans both in the field and in storage were established using a participatory rural appraisal (PRA) in three extension planning areas (EPAs) in Lilongwe agricultural development division (ADD). Results confirmed that the two bruchid species are important storage pests, causing serious storage losses among smallholder farmers. In the absence of any control measures, farmers indicated that more than 50% of their stored beans could be lost to bruchids. Indigenous bruchid control measures are not very effective, making it necessary to search for other control methods. It was also clear from the PRA results that breeders need to consider both agronomic and culinary traits in bean cultivar development. This would enhance uptake of newly developed varieties. To address the problem of bruchid damage experienced by smallholder farmers, a total of 135 dry bean genotypes, comprising 77 landraces and 58 improved varieties (obtained from collaborating partners) were tested under laboratory infestation (nochoice test methods) and field infestation (free-choice test methods). The objective of this study was to identify effective sources of resistance to the two bruchid species. Results of the study showed that there was a wide variation among the genotypes for resistance to the two bruchid species. Overall results showed that 88% of the genotypes ranged from susceptible to highly susceptible to Z. subfasciatus and only 12% of the genotypes were moderately resistant to resistant. Genotype screening for resistance to A. obtectus showed that only 12.5% were resistant, whereas 87.5% were moderately to highly susceptible. All of the improved genotypes were 100% susceptible to A. obtectus in storage. One landrace, KK35, consistently showed a high level of resistance to both bruchids under laboratory infestation, with results similar to the resistant checks (SMARC 2 and SMARC 4), while another landrace, KK90, displayed stable resistance under both laboratory and field infestation. However, performance of most genotypes was not consistent with field and laboratory screenings, suggesting that mechanisms of bruchid resistance in the field are different from that in the laboratory and field screening should always be used to validate laboratory screening. Resistance in the field was not influenced by morphological traits. The seed coat played a significant role in conferring resistance to both bruchid species in the laboratory, whereas arcelin did not play any significant role in conferring resistance in the landraces. The inheritance of resistance to A. obtectus was studied in a 6 x 6 complete diallel mating design, involving crosses of selected Malawian dry bean landraces. The F1 crosses, their reciprocals, and six parents were infested with seven F1 generation (1 to 3 d old) insects of A. obtectus in a laboratory, no-choice test. There were significant differences among genotypes for general combining ability (GCA) and specific combining ability (SCA). However, SCA accounted for 81% of the sum of squares for the crosses, indicating predominance of the non-additive gene action contributing to bruchid resistance. A chi-square test for a single gene model showed that 5 of the 13 F2 populations fitted the 1:2:1 segregation ratio of resistant, intermediate and susceptible classes, respectively indicating partial dominance. The eight F2 populations did not conform to the two gene model of 1:4:6:4:1 segregation ratio of resistant, moderately resistant, moderately susceptible, susceptible and highly susceptible classes, respectively. Average degree of dominance was in the partial dominance range in five F3 populations, but in general resistance was controlled by over-dominance gene action in the F2 populations. The additive-dominance model was adequate to explain the variation among genotypes indicating that epistatic effects were not important in controlling the bruchid resistance. The frequency distribution of the 13 F3 populations for resistance to A. obtectus provided evidence for transgressive segregation, suggesting that resistance is conditioned by more than one gene. Reciprocal differences were not significant in the F2 generation seed; but were significant in four crosses in the F3 generation seed for adult bruchid emergence, suggesting that maternal effects or cytoplasmic gene effects also played a role in the inheritance of resistance to the common bean weevil. Through this study, important sources of bruchid resistance in dry bean have been identified in Malawian landraces (KK35, KK90 and KK73). These resistant sources will be used in a breeding programme to develop bruchid resistant bean cultivars, as well as improve resistance in susceptible commercial bean cultivars currently grown by farmers in Malawi.
Occurrence of cowpea aphid-borne mosaic virus and prospects of improving resistance in local cowpea landraces in Uganda.
(2007) Orawu, Martin.; Melis, Robertus Johannes Maria.
Viral diseases are a major limiting factor to cowpea production in many countries of Africa. In Uganda, studies indicated that the cowpea aphid-borne mosaic virus (CABMV) is common and a potential threat to cowpea production in the region. There have been no efforts to develop cowpea cultivars with resistance to CABMV in Uganda. This work focused on the development of cultivars resistant to CABMV. Production of cowpea in Uganda is constrained by several factors, including a lack of awareness of diseases among the majority of farmers. A participatory rural appraisal (PRA) was conducted to elicit farmers’ indigenous knowledge of cowpea production and also to gain insight into their understanding of viral diseases affecting cowpea in Uganda. PRA tools such as group discussions, transect walks, problem listing and ranking were used to gather information. Insect pests, diseases, low yielding cultivars and the high cost of pesticides were perceived to be the most important production constraints. Farmers were not aware of the problem of virus diseases, but provided descriptive names of symptoms. Only three cowpea cultivars (Ebelat, Ecirikukwai and Blackcowpea) were produced in the area. Seed size and colour were seen as important traits in new varieties. Information about the occurrence, distribution and identity of cowpea viruses is limited in Uganda. The objective of this study was to identify the important cowpea virus diseases occurring naturally in the major cowpea growing regions of Uganda. Surveys were conducted to determine the incidence and severity of virus symptoms in four districts (Soroti, Kumi, Pallisa and Tororo) in 2004 and 2005. The incidence ranged from 40.5 to 94.4% and severity ranged from 15.0 to 30.6% (for Kumi and Pallisa districts, respectively) during the 2004 surveys. In 2005, the incidence ranged from 55.9 to 85.4% and severity ranged from 4.7 to 14.5% (for Tororo and Soroti districts, respectively). The CABMV, cowpea mild mottle virus (CPMMV), cowpea severe mosaic virus (CPSMV) and cucumber mosaic virus (CMV) were serologically detected by double antibody sandwich enzyme- linked immunosorbent assay (DAS-ELISA). Fifty four improved cowpea genotypes were screened for resistance to CABMV during the first season of 2004 at Serere Agricultural and Animal Production Research Institute in Uganda. Further screening was conducted in the second season of 2004 using 27 genotypes. The genotypes were planted in single rows between the rows of the susceptible cultivar, Ebelat. This was to provide high pressure of aphid vector (Aphis craccivora Koch) and CABMV inoculum. In addition, the test genotypes were artificially inoculated with a CABMV extract on fully expanded primary leaves of fourteen day-old seedlings. The CABMV incidence and severity was assessed. Disease severity was assessed on a 0-60% visual estimation scale where 0 = with no symptoms and 60 = with severe symptoms. Serological analysis was conducted using DAS-ELISA. Five genotypes showed good levels of resistance to CABMV, namely MU-93, IT82D-889, IT82D-516-2, IT85F-2841 and SECOW-2W. These resistant lines were crossed with three susceptible local landraces, namely Ebelat, Ecirikukwai and Blackcowpea in a North Carolina II mating design. The F1, F2 and BC1F1 populations and the parents were evaluated in the field to assess the response to CABMV and to study the inheritance of resistance to CABMV. The general combining ability (GCA) and specific combining ability (SCA) effects were significant, indicating that both additive and non-additive genetic factors are important in determining the control of CABMV in cowpea. The proportions (%) of the sum of squares for crosses attributable to GCA and SCA for CABMV severity were 51.4% for GCA due to females, 8.4% for GCA due to males and 40.2% for the SCA. The narrow-sense heritability estimates, obtained by regressing F1 on mid-parents was 0.87 and 0.84, F2 on F1 progenies 0.49 and 0.48, and F2 progenies on mid-parents 0.63 and 0.79, for AUDPC and final disease severity, respectively. Single gene conditioned resistance in seven populations, but resistance was quantitatively inherited and involved many genes in eight populations. Observation of transgressive segregation and moderate to high heritability suggests a quantitative mode of gene action and the importance of additive effects. The predominance of GCA variance, high heritability estimates and observation of transgressive segregation suggested that resistance could be improved by selection.
Recurrent selection for gray leaf spot (GLS) and phaeosphaeria leaf spot (PLS) resistance in four maize populations and heterotic classification of maize germplasm from western Kenya.
(2007) Kwena, Philip Onyimbo.; Derera, John.; Tongoona, Pangirayi.; Odongo, Omari Mumani.
Maize (Zea mays L.) production is constrained by a number of stresses, amongst the most important are gray leaf spot (GLS) caused by a fungus Cercospora zeaemaydis Tehon and E.Y. Daniels and Phaeosphaeria leaf spot (PLS) caused by Phaeosphaeria maydis (Henn.). The diverse germplasm comprising farmer collections and exotic material used in the medium and highland altitudes maize breeding programmes in western Kenya has not been improved for resistance to the two diseases. Heterotic patterns of germplasm from this region have also not been studied. Therefore, the objectives of this study were to (i) assess the prevalence, importance, and farmers’ perceptions of GLS and PLS, (ii) characterize maize germplasm collections into their heterotic groups and (iii) improve four maize populations for GLS and PLS resistance through recurrent selection. The participatory rural appraisal (PRA) was conducted at three sites in western Kenya during the 2005/2006 cropping season. Data was generated using a checklist in group discussions with 109 male and 123 female farmers as well as key informants. Constraints were identified and prioritised. The five most limiting, in order of importance, were low soil fertility, poor varieties and seed, drought, Striga, pests and diseases (GLS and PLS). Gray leaf spot and PLS were reported in all sites but farmers did not know the causes of these diseases. Farmers preferred local varieties Tiriki, Anzika and Kipindi due to their greater resistance to diseases than commercial hybrids. Farmer criteria for variety selection were low fertilizer, Striga and disease resistance, drought tolerance, closed tips, and high yield potential. Due to the high cost of hybrid seed farmers selected and planted their own seed from advanced generations from previous seasons. Across all the sites, yield gap between on-farm and expected yield potential was estimated as ranging from 4.73t ha-1 to 5.3t ha-1 mainly due to the identified constraints. Therefore maize breeding should focus on addressing important maize production constraints and farmers’ preferences identified in this study in developing varieties that will increase maize yields on-farm. During 2005/2006, seventy 77 testcrosses were developed through crossing 47 germplasm collections with four population testers, Kitale synthetic II (KSII), Ecuador 573 (EC 573), Pool A and Pool B. Crosses and testers were evaluated at Kakamega during 2006/2007 in a 9 x 9 triple lattice design. Significant (p < 0.05) differences in grain yield, ear height, days to 50% anthesis, GLS and PLS resistance were observed. Both general and specific combining ability effects (GCA and SCA, respectively) were significant (p < 0.01), with SCA accounting for more than 50% of the variation for GLS, PLS and yield and less than 50% for ear height, days to 50% anthesis and silk. This indicated that both additive and non-additive gene effects were important but non-additive gene effects were more important in conditioning these traits. High SCA effects indicated high heterosis between collections and populations. Both yield heterosis and SCA were used to study heterotic patterns, but percentage yield heterosis data was used to classify these materials into heterotic groups. Based on significance (p < 0.05) of percentage yield heterosis as a primary factor for classification, seven collections were classified to Pool A, 17 to Pool B, 12 to KSII and 6 to EC 573 heterotic groups. The study indicated that germplasm collections belong to distinct heterotic groups therefore they can be infused into these populations (Pool A, Pool B, KSII and EC 573). Four populations, KSII, EC 573, Pool A and Pool B were subjected to one cycle of reciprocal recurrent selection (RRS) and two cycles of simple recurrent selection (SRS) during the 2004-2006 cropping seasons at Kakamega. Response to selection was assessed by evaluating C0, C1 and C2 and four commercial checks in a randomised complete block design in three replications at Kakamega and Kitale during 2007. All cycles except C0 of Pool A were more resistant to GLS than the three checks, H623, KSTP94 and PHB3253. Response to selection for GLS was significant (p < 0.01) in the desired direction. Gains ranged from -32.2% to 6.4% cycle-1 for RRS and 0.0% to -61.3% cycle-1 for SRS. Heritability estimates of between 59% and 76.3% for GLS and 39% and 80% for PLS were observed indicating that both GLS and PLS can be improved through selection. Significant negative correlations between GLS and yield were observed in Pool A C0 (r = -0.947, p < 0.01) and between yield and PLS in Pool A C0 (r = -0.926, p < 0.01). These indicated gain in yield as GLS and PLS were selected against. Generally, SRS out performed RRS method both in genetic gain and time, as indicated by gain of -61% for SRS and -32.2% for RRS, respectively. Two cycles of selection were achieved in two years with SRS as compared to only one with RRS. These results clearly demonstrated that it is possible to improve for GLS resistance using simple and reciprocal recurrent selection methods. The main constraints to maize production in Western Kenya were low soil fertility, Striga, drought, lack of seed and diseases. Farmers preferred varieties that can do well under the constraints mentioned. Local collections belonged to distinct heterotic groups with good resistance to GLS and PLS and were highly heterotic to four maize population testers with both SCA and GCA effects being important in conditioning GLS and PLS resistance. Recurrent selection methods were found to improve maize resistance to GLS and PLS. Breeding should therefore, focus in development of hybrids and improvement of populations using these local collections by employing SRS and RRS selection methods with identified constraints and farmer preferences in mind.
Breeding investigations of finger millet characteristics including blast disease and striga resistance in Western Kenya.
(2008) Oduori, Chrispus O. A.; Derera, John.; Tongoona, Pangirayi.
Finger millet (Eleusine coracana (L.) Gaertn. ssp. coracana) is an important food, food security and cash crop in eastern and southern Africa where small-scale farmers grow it in low input farming systems. The crop has food security, nutritional, cultural, medicinal, and economic value with high industrial potential. Little research and hardly any breeding have been done on the crop leading to low yields and low production. A project was therefore implemented in western Kenya during 2004-2007 seasons to investigate the possible breeding contributions to enhance productivity and production of the crop. The research comprised a social survey, germplasm evaluation, appraisal of ethrel as a chemical hybridising agent (CHA), genetic analysis of yield, and resistance to blast and Striga, and breeding progress in developing new finger millet varieties. A participatory rural appraisal (PRA) was conducted in three districts during 2006 to position finger millet (FM) in the farming systems, production constraints, and variety diversity and farmer preferences. The PRA established the high rating the peasant farmers gave to finger millet among crop enterprises, using it for food, cash, brewing, ceremonies and medicinal purposes. Farmers cultivated many varieties ranging from five to nine in a district, but each district had its own popular variety. Farmers used the following criteria to select new cultivars: high yield potential; early maturity; resistance to blast disease, Striga, birds, drought, and lodging; large head size, dark grain colour, and good taste. This probably indicated the willingness of farmers to adopt new varieties. Farmers identified constraints to production as blast disease, Striga, wild FM, birds, rats, termites, lack of market, labour shortage, and low yield. The farmers’ variety selection criteria and production constraints underscored the need to improve finger millet varieties. Evaluation of 310 accessions for trait variability and association conducted during 2005 long rain (LR) season at two sites revealed wide variation among the accessions for yield and secondary traits. The best accessions grain yield was above the yield potential of 5,000- 6,000kg ha-1 reported in other environments. Accessions KNE 072 (7,833kg ha-1), GBK 028463 (7,085kg ha-1), GBK 029661 (6,666kg ha-1) and FMBT ACC#42 (6,566kg ha-1) were outstanding. The data showed the opportunity to select for yield directly because of its wide variability but indirect selection could also be used to exploit seedling vigour as shown by its high correlation to yield and direct and indirect positive effects on yield through plant height and single plant yield in path analysis. The wide genetic variability among the genotypes for several traits indicated high potential to breed new and better finger millet varieties.
Quantitative genetic analysis of agronomic and kernel endosperm traits in quality protein maize (QPM) and investigations of the putative nutritional value of contaminated QPM crops.
(2008) Machida, Lewis.; Derera, John.; Tongoona, Pangirayi.
The importance of maize in sub-Saharan Africa and the potential of quality protein maize (QPM) to alleviate the nutritional gap caused by lack of access to adequate protein rich foods were highlighted. Frustrations from complex inheritance systems of the QPM trait leading to calls for more information on the inheritance and stability of the QPM trait, fear of total loss of the QPM trait due to the recessive nature of the opaque-2 gene to the wild type gene in normal endosperm maize when QPM and normal endosperm maize coexist, lack of information on the nutritional value of contaminated QPM grain, and poor linkages with the smallholder farmers were all cited as drawbacks in the promotion and adoption of QPM. Therefore the objectives of the study were: 1) To solicit the participation of smallholder farmers in the development and setting up of QPM breeding goals, objectives and dissemination strategies; 2) To estimate general combining ability (GCA), specific combining ability (SCA) and reciprocal cross effects on anthesis days, quality traits and grain yield among the publicly available elite QPM inbred lines; 3) To compare experimental QPM hybrids with selected check cultivars, and normal endosperm maize hybrids for grain yield performance and kernel endosperm modification scores; 4) To evaluate QPM hybrids for grain yield and kernel endosperm modification scores in selected sub-Saharan Africa target environments. 5) To determine the level of normal endosperm maize pollen contamination that can occur in quality protein maize without loss of nutritional superiority; 6) To estimate the average levels and the patterns of foreign maize pollen contamination in QPM crops coexisting with normal endosperm maize varieties. The contribution of smallholder farmers in setting breeding goals and dissemination strategies for QPM was solicited. One major finding was that the kernel endosperm qualities of landrace “Hickory King” need to be incorporated into new QPM varieties so as to encourage adoption. Farmers preferred getting information on QPM varieties through their local Agricultural Research and Extension (AREX) officers. A diallel study of 36 F1 QPM hybrids and their reciprocals was conducted across seven environments for agronomic traits and three environments for nutritional value traits. There were significant differences for all traits analysed using Griffing Method 3 model 1. General combing ability effects were significant and important in the control of anthesis days, kernel endosperm modification, protein content, tryptophan content, and Quality Index (QI). Specific combining ability effects were highly significant and important in the control of grain yield. There were significant SCA effects for anthesis days and QI but the proportions were lesser than the corresponding GCA effects in both traits. Kernel endosperm modification had significant GCA effects and nonsignificant SCA effects. Reciprocal-cross differences were significant for anthesis days, tryptophan content and QI. Nonmaternal effects were significant for tryptophan content whilst both maternal and nonmaternal effects were significant for QI and anthesis days. Nonmaternal effects were relatively more important than maternal effects in all the cases where there were significant reciprocal-cross differences. The cross with the highest SCA effects for grain yield was CZL03016/CML144. The most desirable cross with the lowest anthesis days was CZL03016/CML144 whilst the most desirable inbred line with the lowest anthesis GCA effects was CZL03016. The inbred line with the most desirable GCA effects for protein content, tryptophan content and QI was CML264Q. Inbred line CML264Q crossed to CZL03016 had significant SCA effects for QI. The most desirable GCA effects for kernel endosperm modification were associated with inbred line CZL03016 followed by CZL01006. Maternal effects for both tryptophan content and QI were associated with inbred line CML264Q. Genotype by environment interaction effects across all the seven environments were significant for grain yield and kernel endosperm modification. Check hybrids performed better than experimental hybrids for grain yield but were not different for kernel endosperm modification. The normal endosperm maize hybrids were significantly better for both grain yield and kernel endosperm modification. However, in all the comparisons the best check or normal endosperm maize hybrid was not significantly better than the best experimental or QPM hybrid, respectively. The most desirable score for kernel endosperm modification was from the cross of CZL01006 to CZL03016 though not significantly different from the check hybrid with the best score. AMMI1 was the best model for kernel endosperm modification scores and AMMI2 was suitable for grain yield. Both environments and hybrids were diverse. Grain yield of most hybrids was not stable with specific adaptation to environments. The most stable hybrid with no specific adaptation was CML176/CML181f with a mean yield of 6.51t ha-1. The putative nutritional superiority of normal endosperm maize pollen contaminated QPM as measured by the QI depended on the environmental conditions. The moisture stressed environment (CIMMYT Harare) had a lower QI value (0.858) and a lower tolerance to pollen contamination of 15.3% whereas the grain produced under near to optimum growing conditions (ART farm) had a higher QI value (0.915) and a higher tolerance to pollen contamination of 31.9% before total loss of nutritional superiority. Thus contaminated QPM grain had nutritional superiority up to a certain point before total loss of nutritional superiority. Geostatistical analysis was used to determine the levels and patterns of pollen contamination that occur when QPM and normal endosperm maize crops coexist under conditions minimising both temporal and geographical isolation to the lowest possible levels for the two independent crops. Higher pollen contamination levels were restricted mostly to the sections of the QPM crop proximal to the rows of normal endosperm maize crop, with the central parts of the QPM crops experiencing relatively low levels of contamination. For the four experiments (QCS200711, QCS200712, QCS200721 and QCS200722) in which the thresholds to nutritional superiority were determined, 87.9%, 94.8%, 62.2% and 65.6% of the crop areas passed for superior QPM grain, respectively. Estimates for average contamination levels of homogenous mixtures of grain from each of the nine experiments were below 20% contamination. The contamination levels were far less than previously thought. “Hickory King” kernel quality attributes were important in breeding QPM varieties for the smallholder farmers. Parents of the 72 hybrids were diverse for the agronomic characters studied and three of the experimental hybrids were found to be adapted and comparable to the check varieties. Quality protein maize tolerance to foreign pollen contamination without loss in nutritional superiority depended on growing conditions. The coexistence of QPM and normal endosperm maize without total loss of QPM nutritional superiority was feasible.
Optimising aspects of a soybean breeding programme.
(2008) Jarvie, John Antony.
Abstract not available.
Breeding for Cassava brown streak resistance in coastal Kenya.
(2008) Munga, Theresia Luvuno.; Melis, Robertus Johannes Maria.; Shanahan, Paul Edward.; Laing, Mark Delmege.
Cassava (Manihot esculenta Crantz ssp. esculenta) is the second most important food crop and a main source of income for the rural communities with potential for industrial use in the coastal region of Kenya. However, its productivity of 5 to 9 t ha-1 is low due to the low yield potential of the local cassava landraces caused by cassava brown streak disease (CBSD) among other biotic and abiotic constraints. Breeding for CBSD resistant varieties with farmer desired characteristics is hampered by limited information on the current status of the disease and farmers’ preferred characteristics of new CBSD resistant genotypes. In addition, there is a lack of an effective inoculation technique for cassava brown streak virus (CBSV) for screening genotypes for CBSD resistance. Information about the general combining ability (GCA) and specific combining ability (SCA) for CBSD above and below ground symptoms, fresh biomass yield (FBY) and fresh storage root yield (FSRY) (kg plant-1), harvest index (HI), dry matter % (DM %) and picrate score (PS) is limited and conflicting especially for the cassava germplasm in Kenya. These studies were carried out to update information on the status of CBSD, farmer’s preferences for cassava genotypes, and identify the most effective CBSV inoculation technique. In addition, the studies aimed to: determine the GCA and SCA for, and gene action controlling, the incidence and severity of above ground CBSD, root necrosis, FBY, FSRY, HI, DM %, and PS; and identify CBSD resistant progeny with farmers’ desired characteristics. A survey carried out in three major cassava-growing divisions in Kilifi, Kwale and Malindi Districts indicated that there was potential to increase production and productivity by increasing the area under cassava production and developing CBSD resistant genotypes that are early maturing, high yielding and sweet. In addition, CBSD was widely distributed, being present in 98.0% of the farms surveyed at a mean incidence of 61.2%. However, 99.0% of farmers interviewed lacked awareness and correct information about the disease. The genetic variability of cassava within the farms was low as the majority of farmers grew one or two landraces. Highly significant differences (P < 0.01) were observed among inoculation techniques for CBSV for which the highest infection rate of up to 92.0% was observed in plants inoculated by wedge grafting infected scion. Highly significant differences (P < 0.01) were observed among genotypes, between sites and their interaction for incidence of CBSD and root necrosis, while the differences among genotypes and the interaction between genotypes and the period of ratings were highly significant (P < 0.01) for the severity of CBSD and root necrosis. Above ground CBSD symptoms were not always associated with below ground CBSD symptoms and below ground CBSD symptoms were more severe at 12 months after planting (MAP) than at 6 MAP. Therefore, selecting cassava genotypes with resistance to below ground CBSD is more important than selection based on resistance to above ground CBSD and should be done after 12 months. Genotypes 5318/3 (exotic) followed by Msa140 and Plot4 (both local) had high resistance and can be used as new sources of resistance to root necrosis. Both GCA and SCA effects were highly significant with GCA sums of squares (SS) predominant over the SCA SS for most traits evaluated except for DM % at the clonal stage. These results indicate that although additive and non-additive genetic effects are involved in the inheritance of these traits, the additive genetic effects are more important except for DM %. Therefore breeding for CBSD-resistant genotypes that have characteristics desired by farmers in the coastal region of Kenya can be achieved through recurrent selection and gene pyramiding followed by participatory selection or use of a selection index that incorporates characteristics considered important by farmers.
Genetic diversity of proprietary inbred lines of sunflower, determined by mapped SSR markers and total protein analysis.
(2008) Erasmus, Tertia Elizabeth.; Laing, Mark Delmege.
This study compared DNA based SSR markers with total seed protein markers, used to evaluate genetic diversity of sunflower. The multiplex-ability, cost effectiveness and applicability of microsatellites as molecular markers for a genetic diversity study were investigated and evaluated based on pedigree data of the sunflower germplasm. A solution for oil and fat interference in ultrathin iso-electric focusing gels was investigated, in order to make imaging and interpretation easier and clearer. Total protein analysis was utilized for the determination of genetic diversity on the same inbred material used for the DNA analysis. Finally a correlation is made between the data obtained on DNA vs Protein compared with phenotype and expected pedigree data. A set of 73 SSR markers with known mapped positions were utilized to determine genetic similarity in a group of sunflower inbred lines. Cluster analysis of genetic similarity revealed an excellent correlation with the breeding background and source information obtained from breeders on all inbred lines used in this study. Cluster analysis gave a clear differentiation between B and R-lines, showing clearly defined heterotic groups of the proprietary set of inbred lines. The most outstanding single-locus SSR markers in the set used for this study were identified and used as a core set. Multiplex assays were designed and optimized for the most cost and time effective method for rapid variety identification. The selected markers produced robust PCR products, amplified a single locus each, were polymorphic among the elite inbred lines and supplied a good, genome-wide framework of completely co-dominant, single-locus DNA markers for molecular breeding. The use of a fluorescent-tailed primer technique resulted in a considerable cost saving. Furthermore, the SSR markers can be multiplexed through optimization, in order to avoid undesirable primer-primer interactions and non-specific amplification. First stage iso-electric focusing of total protein extracts were used to analyze sunflower looking at genetic purity and genetic variety verification on diverse sunflower germplasm. Severe visual interference was visible on most seed storage protein extracts of sunflower. This interference was visible as a distortion in the gel matrix on the anodal end of the gel, and caused important proteins to denature in the presence of heightened field strength and the absence of a uniform matrix. Adjustment of the extraction solutions removed this interference. Total protein profiles were generated with the use ultrathin layer iso-electric focusing (UTLIEF) to assess the level of genetic diversity on the same set of sunflower lines used for the SSR analysis. Finally, the genetic diversity of the sunflower germplasm was analysed by comparing proteomic, genomic and pedigree data from the same germplasm. A total of 295 alleles were amplified with a set of 73 SSR markers with known mapped positions. These were utilized to determine the genetic relatedness of a group of B-lines and R-lines of sunflower. In parallel, a total of 68 protein bands were visualized using protein samples of two types of seed storage proteins derived from exactly the same sunflower lines. Cluster analysis clearly differentiated between the B-lines and R-lines, identifying defined heterotic groups of this proprietary set of lines. The comparison of DNA and protein data for the application of genetic diversity studies is analysed, as well as the general comparison on the use of the two different molecules as markers.
Investigation of growth potential of alternative eucalyptus species for mid and high altitude sites in the summer rainfall region in South Africa.
(2008) Otim, Christopher Komakech.; Laing, Mark Delmege.
A study was undertaken to compare growth potential of three Eucalyptus species of natural origin in South Eastern Australia, with commercially grown species on mid and high altitude temperate sites in the summer rainfall growing zones in South Africa. The three species were Eucalyptus globulus subsp. bicostata (E. bicostata), Eucalyptus cypellocarpa and Eucalyptus nobilis. Nine sites were selected to represent the growing areas of South Africa experiencing cold winter drought with occasional snow falls. Improved, commercially grown pure Eucalyptus species and interspecific hybrid clones were included as controls in the trials to give comparative growth performances on specific sites. Both balanced and unbalanced lattice designs were used to evaluate the growth potential of the unimproved Australian species and the improved commercial controls incorporated into the trials. Volume production and basal area growth were assessed for the three species at all sites. However, only three sub species E.globulus (E. bicostata, E. maidenii and E. globulus) showed varying levels of disease (Mychosphaerella nobilosa) infestation and this was therefore assessed in trials at 12 and 30 months respectively, and correlation analysis was used to study the relationship between the impact of disease infestation and growth performance. It was found that negative phenotypic correlations existed between the levels of infection and tree growth. ie greater infection slower growth. Evaluation of genotype x environment interaction (GXE) revealed that this did not exist in the E. bicostata nor E. nobilis populations, and therefore one population of each species can be developed for all the sites tested. E. cypellocarpa was the only species that showed some GXE interaction implying that separate populations to be developed for different sites. Contrary to what was expected, unimproved Eucalyptus species being investigated performed equally as well as the improved commercial species included as controls, thus providing potential for commercial deployment with selection and breeding.
A quantitative study on growth, basic wood density and pulp yield in a breeding population of Eucalyptus urophylla S.T. Blake, grown in KwaZulu-Natal.
(2008) Van Deventer, Francois.; Laing, Mark Delmege.
The first objective of this study was to evaluate Eucalyptus urophylla S.T. Blake provenances in terms of their growth, basic wood density and pulp yield properties. The second objective was to determine the genetic and phenotypic associations that may exist between growth, basic wood density and pulp yield. Data of 9022 open-pollinated progenies representing 306 families, collected from 17 provenances, were used to evaluate growth. To evaluate basic wood density and pulp yield, as well as the genetic and phenotypic associations between the three traits, data of 300 open-pollinated progenies representing 30 selected families from 11 provenances were used. Narrow-sense heritabilities for all three traits were estimated from data collected in a single E. urophylla provenance/progeny trial planted in northern KwaZulu-Natal. The results showed that significant provenance effects for growth, basic wood density and pulp yield were observed. Heritability was found to be strong for basic wood density (h2 = 0.51) and moderate to weak for volume growth and pulp yield (h2 = 0.17 and h2 = 0.11, respectively). This suggests that big genetic gains can be achieved for basic wood density. Although the heritability estimates for volume growth and pulp yield were weaker, this still allows for tree breeders to make significant genetic gains through accurate selection from this E. urophylla breeding population. Genetic and phenotypic associations between the three traits were estimated from data collected in the same trial. The genetic correlation between volume growth and pulp yield was positive and moderately strong (rA = 0.66). The genetic correlation estimate between volume growth and basic wood density was found to be negative but weak (rA = -0.08). The genetic association between pulp yield and basic wood density was found to be positive but weak (rA = 0.17). Correlation estimates between volume growth and basic wood density, as well as between pulp yield and basic wood density produced standard errors greater than the correlation itself (s.e. = ± 0.32 and ± 0.22, respectively). These high standard errors, coupled with weak genetic correlations, suggest that these correlation estimates are non-significant, but are probably a result of utilizing a small sample size. However, these correlations have a value in making breeding choices, if treated with caution. Key words: Eucalyptus urophylla, provenance, growth, basic wood density, pulp yield, heritability, genetic correlation

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